Paper digest: Genomic Inference of Transmission History (Non structured coalescent methods)

Published: January 10, 2025 less than 1 minute read, with 66 words. Post views:

This post focuses on several papers using non-structured coalescent methods to infer transmission history from genomic data.

Genomic Infectious Disease Epidemiology in Partially Sampled and Ongoing Outbreaks by Xavier Didelot et al. on Molecular Biology and Evolution, 2017.

Transphylo (R package) was introduced in this paper.

Bayesian reconstruction of transmission within outbreaks using genomic variants by Nicola De Maio et al. on PLOS Computational Biology, 2018.

Tags: Phylogenetics

Categories: Paper digest

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