Posts by Category Paper digest 8 Course notes 8 Misc 6 Book notes 4 Programming 2 My tools 1 Paper digest March 01: Paper digest: Modelling pathogens with many strains February 25: Paper digest: Global spread and invasion dynamics of SARS-CoV-2 October 18: Paper digest: Detecting and quantifying sgRNA using periscope (Parker et al.) August 11: Paper digest: Informing policy via dynamic models: cholera in Haiti (Jesse Wheeler) July 04: Paper digest: Simulation-based Inference for Partially Observed Markov Process Models with Spatial Coupling (Kidus Asfaw) October 30: Paper digest: Adaption and Selection in SARS-CoV-2 evolution (Preprint, 2022) October 17: Paper digest: Antidbody cross-reactome against flu surface glycoproteins (Nat Immunol, 2017) September 20: Paper digest: UShER - placing new genomes onto a existing phylogenetic tree (Nat Genet, 2021) Back to Top ↑ Course notes December 16: Course notes: Bayesian phylogenetics basics April 15: Workshop Notes: Models and Inference in Population Genetics IV: Fragmentation-coalescence and related models March 27: Course notes: Dive into Deep Learning (D2L) / 动手学深度学习 October 22: Course notes: Essence of linear algebra (3b1b) May 25: Course notes: Simulation-based Inference for Epidemiological Dynamics (Aaron A. King) May 12: Course notes: Computational Statistics and Machine Learning (Fall 2020 by Nicholas Zabaras via YouTube) April 11: Course notes: Infectious Disease Modelling (Imperial College London via Coursera) December 17: Course notes: Machine Learning (Lee Hung-yi, 2016) Back to Top ↑ Misc November 14: Deploying web-based code editor and Github Copilot on my local machine November 09: Deploying a large language model (LLM) on my local machine September 02: View count is available September 01: Comments are now functional in blog posts August 31: How to embed PDF in html August 30: First blog: A new start Back to Top ↑ Book notes March 09: Book notes: Coalescent theory: An introduction February 01: Book notes: The Scientist’s Guide to Writing April 30: Book notes: Epidemics, Models and Data using R (Ottar N. Bjørnstad, 2018) September 21: Book notes: Introduction to Probability (Dimitri P. Bertsekas and John N. Tsitsiklis, 2008) Back to Top ↑ Programming June 12: Rosalind notes: Bioinformatics stronghold September 09: Cross-compiling Rust programs (for Linux and Windows) on Mac OS Back to Top ↑ My tools September 10: epitope_diversity: Estimating the mutation diversity within a genomic region (e.g. epitope) Back to Top ↑ Total words: 4520 Total site views: Total site viewers:
July 04: Paper digest: Simulation-based Inference for Partially Observed Markov Process Models with Spatial Coupling (Kidus Asfaw)
October 17: Paper digest: Antidbody cross-reactome against flu surface glycoproteins (Nat Immunol, 2017)
September 20: Paper digest: UShER - placing new genomes onto a existing phylogenetic tree (Nat Genet, 2021)
April 15: Workshop Notes: Models and Inference in Population Genetics IV: Fragmentation-coalescence and related models
May 12: Course notes: Computational Statistics and Machine Learning (Fall 2020 by Nicholas Zabaras via YouTube)
September 21: Book notes: Introduction to Probability (Dimitri P. Bertsekas and John N. Tsitsiklis, 2008)
September 10: epitope_diversity: Estimating the mutation diversity within a genomic region (e.g. epitope)
